Mix flour, sugar, cocoa, salt, and baking soda. Add oil, water, vinegar, and vanilla. Combine thoroughly; fill cupcake liners 2/3 full of mixture.
Mix cream cheese, egg, sugar, and salt until fluffy. Fold in chocolate chips. Drop one heaping teaspoon of Filling into muffin batter. Bake for 25 minutes at 350°. Frost, if desired.
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